Answer: What a fun game she has discovered! Perhaps you could make her a spot where she is invited to sleep that has all the amenities of the flower bed -- softly worked earth, a nice cushion of mulch, and perhaps some nice spring sunshine? (I once had a dog who preferred a spot in the shade to dig holes into the cool earth on hot days.) Then you could praise her for settling in there and scold her for sleeping in the beds. Other possibilities are a small fence as a visual reminder of where she shouldn't be, thorny branches strewn on the beds to make them uncomfortable, and then possibly the repellent sprays applied to the garden such as "GetAway" Animal Repellent for deer, rabbits, squirrels, dogs, and cats. Some gardeners have also reported success with home made garlic and/or pepper sprays. Good luck with the training!
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