That pot is HUGE! It will grow into it in a couple years. Repotting AND fertilizing... Potting soil comes with a built in 6 month supply of fertilizer and you added more fertilizer. Trees just don't need that much, especially twice the recommended dose. Next time you fertilizer (next spring), use citrus specific plant food at half strength - repeat in early summer and mid-summer. That leaf is the result of dealing with all that plant food.
Citrus produce two types of seed. If the seed is polyembryotic (more than one embryo per seed), the tree will be a meyer lemon. If the seed is Monoembryonic (one embryo), the tree will not be a meyer lemon. Because that seed grew just one tree, it may be monoembryonic as polyembryonic seeds produce multiple trees. That may also account for why this tree looks different then the others.
Forgot to add: Monoembryonic citrus seedlings are less hardy than polyembryonic seedlings.