I don't know the content of bird manure so I cannot be sure that it is the cause of the plant problems. If you suspect it is, then scrape off the manure if you added it on top. Otherwise, flush a lot of clear water through the rootball to wash the manure out. I don't recommend replacing the soil.
In general, it is best to limit non-sterile ingredients (manure, compost, garden soil, etc.) to outdoor use