looking at your pics, Brad, I would say "your" rot is Botrytis
http://extension.psu.edu/pests...
One thing that I *believe* happens a lot, is "infection" by SEVERAL different disease organisms ....once the first disease weakens the plant, it would be very weakened, and other "baddies" would find it easy to join in ! I think this is why it's sometimes hard to pin down the culprit.
All of the spores and bacteria that cause these diseases are present almost everywhere in the soil, but only become a problem when conditions become right for them to really "do their thing". In my case, I ,at first, was blaming my rot problems on the fact that the "infected 'plants seemed to be those planted directly over areas where tree stumps had been ground out, the previous year. I felt either that was creating a "floor", 12"-16" deep, that was holding moisture and affecting good drainage, or, that the organism causing my "rot' might have started from the rotting of the stump residue. While I'm sure the stumps *might* have been one factor, I'm also pretty sure there were MANY factors involved....the conditions of weather, soil chemistry, and culture all happened to be "just right" for an organism to flourish.