I've used all sizes and materials I think. I like to recycle my yogurt cups but they're pretty small- 6 0z, much the same size as a 3" round flower pot- so they demand more attention. 12 oz ones are better, and 16 oz better yet. You can see roots through the clear ones- this is one of my toms from last year.
A tip I got from a friend on another forum:
Sow your tomato seeds directly into large 16 oz cups, filled about 2/3 of the way. After seedlings are growing, add a little more potting mix to the top of the cup. In effect, it "plants" the tomato plant deeper, burying a little of the stem, so that it will form more roots from the stem. Works great.
Any cups can work OK, they just need more attention.It's a consideration if you're gone from home a lot, work long days.... We never know what the weather will bring from year to year. Usually in spring our weather is fairly cool and wet still, but some years it's already hot and dry.
I didn't like peat pots or paper pots at all. In wet weather both got soggy, moldy, gross. In dry weather they dried out miserably. I'll never use either of them again. And remember- the beauty of WSing is supposed to be ease of the method, no fussing. In really can be that way if I mostly stick to my milk jugs. I just don't want to fuss with stuff a lot.
Karen